4/20 Fix alignment bug where direction and selection were in the wrong order
5/3 Fix bug in Gibson set temp_info(overlap_len_display) "[expr {$k +1}] bp"
Fix bug in gibson wizard- take out non feature tags in result

5/4 Change to spinbox in Gibson wizard
Use Gibson wizard “add amplicon features” setting
Golden Gate Designer window title
5/6/21 Bug in X-ray window features
5/7/21 Text map- show features bug/ get_tags_exact bug
5/11/21 Windows startup about window bug
Digest Dialog 10 rows bug
Scan FASTA, allow space in heading lines, convert U to T in search sequences
5/25/21 fast-scroll error bug
Features with introns bug not getting fn tag bug?
5/26/21 Restriction ligation rev-com fragments bug
5/27/21 delete tags with introns bug
Append non-feature tags to new sequence bug
6/2/21 Configure linear feature- feature type not set
Typo in main menu “assembler”
6/15/21 GG designer bug- rev primer highlight wrong
6/16/21 bug in set origin: feature table not updated
6/18/21 bug in sequence alignment- gaps at start of line throw off feature highlighting by 1
7/7/21	bug in ORF info display that caused an infinite loop resizing the window
7/27/21 update bug in Diagnostic sites
	Bug in double-click edit primer sequence in PCR dialog
7/28/21 bug in golden gate enzymes- allowed 2bp overhangs
	Menu font size changes better, not allowed to change on aqua
	Menu icons show on aqua, fixed gibson etc. menu icons
8/03/21 Resize features window grows the window wider than tall
8/03/21 ABI window command-shift-N shortcut fixed
8/16/21 GG assembler allows non-directional fragments without warning
	About dialog donation link broken
8/18/21 Find primers dialog spinbox ranges set
9/2/21  Fix memory leak in Mac "Selection Translate" toggle
9/6/21 Start codon options set for ORF map and find next ORF
9/6/21 Mac quit uses system preferences for keep open windows, mac version doesn’t quit when last window is closed
9/7/21 ABI copy text
9/7/21 Enzyme dialog- quick add for several common Golden Gate enzymes
9/20 Molecular calculators in Help Menu- equimolar reactions etc.
10/12 Fixed bugs in molecular calculator when number fields are blank.
10/12 Fixed two bugs in Restriction Assembler. When opening a vector with a single cut and when inserting a linear sequence in reverse.
10/12 PCR tool primer sequences can have modifications noted by /xxx/ in them. They are ignored.
10/14 fixed bug in aligning to abi file
10/18 fixed bug when pasting genbank file with “>” in comments
10/22 added Dark mode explicit set
10/26 Fixed abi scaling sliders handles not visible bug
12/6  Fixed new feature $clip bug
12/6 Alignment mismatch uses degenerate code in reference sequence
12/6 Fixed Macvec_ints missing bug
12/29 Fixed feature scan bug infinite loop for long presequences
12/29 Fixed bug: cut recognition sites at the start making zero length fragments
1/2/22 Fixed bug: pdf saving with a font that had spaces in the name
1/13/22 Feature scan now works with an amino acid feature definition (requires hand-edited feature libraries for now)
1/13/22 File import now accepts SBOL v1 files (with feature ranges that have explicit values)
1/28 Fixed scrolling bug in diagnostic sites
1/28/22 Sorted output in diagnostic sites
1/28/22 Copy molecular reaction calculator to clipboard
1/28/22 Show molecular reaction calculator to qr code
1/28/22 Fill molecular reaction calculator from GG reaction, gel drop, window sequence
1/31/22 Print option from the main sequence window menu 
2/2/22 Added "print…" to the main menu of sequence windows. 
2/2/22 Added "Edit Features…" back to the Features menu.
2/15/22 Feature scan adds primer sequence into qualifier data
2/15/22 Quick-PCR function in feature table
2/15/22 Golden Gate assembler calculates a reaction efficiency based on NEB data
2/16/22 Added a dialog to edit the current enzymes set (not groups)
2/23/22 Changed how typing or pasting a sequence works- Typing in the middle of a feature adds the feature tag to the new text; typing outside of a feature, even at the edge doesn’t add. Pasting into the middle of a feature adds an intron to the feature instead of breaking it into two features.
2/23/22 Bug in deleting text- deleting an intron via keyboard or paste didn’t re-format the feature to be represented intronless internally (fn tag wasn’t removed)
2/25/22 fixed bug in deleting the last qualifier of a feature in the edit qualifiers dialog
2/25/22 mandatory qualifiers are now added to features in the edit features dialog or when changing feature type in the feature table
3/10/22 Fixed bug in setting dark mode in Windows
3/10/22 Added rev-com translation of abi sequence in tooltip popup in alignment windows
3/10/22 Fixed bug with degenerate bases near the end of a fragment in the GG designer
3/10/22 Preferences>Files can now move the Default Feature and Default Enzymes directories to a user-accessible location.
4/6/22	Fixed a bug in alignment tooltips with a reverse-complemented abi file
4/6/22	Added cSEGUID checksum feature
4/13 Alignment- best direction and aligning to circular template now working
4/28/22 Fixed bug in opening fasta files
5/17/22 Fixed bug in graphic map causing lock-up on mouse-over of features in small circular maps
5/17/22 Fixed bug in opening files by double-click on non-English Windows systems.
5/18/22 Added configuration of label boxes to circular and linear maps
5/20/22 Fixed bug in circular graphic maps applying feature color to labels and connectors
5/25/22 Added option of linear products in Golden Gate Assembler
5/26/22 Fixed bug in “File Open…” dialog when no windows are open on the mac
6/1/22 Fixed a bug in reading Snapgene files
6/15/22 Fixed a bug in linear maps that didn’t draw the first intron if the first exon begins at the first base of the sequence.
6/21/22 Fixed a bug causing major delays in pasting FASTA files
7/22/22 Fixed windows double-click to open files bug?
7/22/22 Fixed windows drag and drop files to open
7/22/22 Fixed bug: scrolling not working when the mouse leaves a sequence are on Mac.
11/9/22 Digest dialog preserves last enzyme selection if no enzyme selection is set. All open windows (up to 10) are populated into the dialog by default.
11/9/22 FASTQ files can be opened as locked sequences. Phred values are visible in X-ray and alignment dialog. Phred values less than a threshold can be searched and can be added as features.
10/01/23 Fixed bug where double clicking in Mac finder would not open file correctly
10/01/23 Added option to use existing restriction fragment in Golden Gate Designer tool

1/12/24 Option to load oligos in Golden Gate assembler tool- looks for hybridizing pairs that can be used in an assebly
1/12/24 Updates to Molecular reactin calculator- shows molecular structure, new recipe multiplier function
1/12/24 New graphic map theme enging coming soon
1/12/24 Inline feature graphical representations coming soon